Preliminary Schedule and Contents:
Day 1, 26.9. : Introduction to Linux, command-line and
standard-programs such as BEDtools
Day 2/3, 27-28.9. : Introduction to NGS Data Analysis; HTS
applications (DeNovo Assembly, Gene prediction, Splice detection,
Isoforms), Epigenetics, Quality Control, Adapter Clipping, read
Day 4, 29.9. : RNA-Seq; Sequencing, Mapping, Differential Expression
Analysis (Exon-based and Transcript-based)
Day 5. 30.9.: Current Topics of RNA-Seq
Day 1-4 will be hands-on tutorials. On Day 5 we will host organized
talks. We will start early on Day 1 (likely around 9:00 or 10:00).
Participants will be able to leave during early afternoon on Day 5.
Full schedules will be posted later on. Participants who are
familiar with Linux and command-line interfaces may skip the first
The institute can be reached by Tram and Bus via the Stations
Wilhelm-Leuschner-Platz, MÃ¼nzgasse and HÃ¤rtelstr.
Food and Drink:
We will provide a central organized Lunch as well as coffee on site.
There are several hotels both in walking distance to the institute
and the main station of Leipzig. With 5 nights stay, costs per night
per person should not greatly exceed about 70 EUR per night.
It is recommended, although not strictly required, that participants
share double rooms when possible. Best call the hotels for
reservation as they usually have more rooms than are listed online!
It is recommended to book as soon as possible as hotel rooms are
likely to get scarce and no contingent could be negotiated
As an alternative to a Hotel, you can book single and double rooms
in this completely newly built hostel:
Travel and Hotel costs will be reimbursed after the summer school by
the project. Participants will need to fill out the attached form.
In cooperation with de.NBI.